PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17198.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 364aa    MW: 40726.3 Da    PI: 7.3385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17198.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.2e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
       KHN17198.1 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding36.51.1e-1170111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++ eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
       KHN17198.1  70 GFSVEEDDIICSLYVSIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      6899****************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.903966IPR017930Myb domain
SuperFamilySSF466895.43E-2711109IPR009057Homeodomain-like
SMARTSM007173.8E-131364IPR001005SANT/Myb domain
PfamPF002494.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-241569IPR009057Homeodomain-like
CDDcd001672.51E-101662No hitNo description
PROSITE profilePS5129415.55267117IPR017930Myb domain
SMARTSM007171.6E-1067115IPR001005SANT/Myb domain
PfamPF002492.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSVEEDDIIC SLYVSIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
HRREPRNRGN YNSVKQENDV NRGSGTTDGD SSSLSLLQEN GSTTHHQEQH QQQPCWPQNI  180
NNMPVLPLQV PLPYKNQGPC FNDQDSLKKL LIKLGGRFSG DSYHPTLDGL NLEFSSHGQQ  240
IYQEQVHVGS SAACISATIN NNNEVQFAQT GQYPGVDNLV QGQGGNFTPS FEEMVSSSNY  300
PDGLEFLYNE GMIDHKIIDT TTTTTWGETS TPIYHHHDSL ASTYQGQGVI QECVLQDFSY  360
PRAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596007.10.0PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y92e-83RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A0B2QAY50.0A0A0B2QAY5_GLYSO; Transcription factor RAX3
TrEMBLI1M8X80.0I1M8X8_SOYBN; Uncharacterized protein
STRINGGLYMA14G10340.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-78myb domain protein 84
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]